BioGRID source records
Filtered BioGRID records retained for provenance.
Coverage and transparency
Database statistics
Current coverage of the curated TripleDB core table and its BioGRID-derived source-evidence layer.
Bundled snapshot
v1.0.0
Showing the bundled statistics snapshot. Run the included local server to load replacement JSON files dynamically.
5,450Curated TDB records
One record per TripleDB accession
5,091Triple records
Three indexed genes
338Quadruple or higher
Four or more indexed genes
8Organisms
15 experimental-system categories
Source-evidence layer
Traceability to BioGRID, manual curation and publications
BioGRID source-record counts come from data/biogrid_source_index.json. Manual non-BioGRID core records are detected when Source_ID in data/tdb_core_interaction_index.json contains the marker TDB. Publication counts merge PubMed identifiers detected in both JSON files.
Indexed BioGRID IDs
Exact identifiers available for source lookup.
Manual non-BioGRID records
Core records whose Source_ID contains the TDB marker.
Unique PubMed IDs
Deduplicated PMID numbers detected in source records and core Qualifications.
Interaction order
Classification is based on the curated gene columns rather than text mining of the qualification field.
| Class | Records | Share |
|---|---|---|
| Triple | 5,091 | 93.4% |
| Quadruple or higher | 338 | 6.20% |
| Pair-context / lower-order | 21 | 0.39% |
Records by organism
The current release is dominated by budding yeast but includes eight organisms.
| Organism | Records | Share |
|---|---|---|
| Saccharomyces cerevisiae (S288c) | 5,332 | 97.8% |
| Schizosaccharomyces pombe (972h) | 92 | 1.69% |
| Homo sapiens | 15 | 0.28% |
| Candida albicans (SC5314) | 4 | 0.07% |
| Mus musculus | 3 | 0.06% |
| Danio rerio | 2 | 0.04% |
| Arabidopsis thaliana (Columbia) | 1 | 0.02% |
| Drosophila melanogaster | 1 | 0.02% |
Experimental annotation
Records by experimental system
All 15 categories from the core curated table are shown below.
| Experimental system | Records | Share |
|---|---|---|
| Negative Genetic | 3,496 | 64.1% |
| Synthetic Rescue | 632 | 11.6% |
| Synthetic Growth Defect | 392 | 7.19% |
| Phenotypic Enhancement | 346 | 6.35% |
| Synthetic Lethality | 298 | 5.47% |
| Phenotypic Suppression | 114 | 2.09% |
| Dosage Rescue | 87 | 1.60% |
| Positive Genetic | 51 | 0.94% |
| Allele Rescue | 10 | 0.18% |
| Synthetic Sickness | 9 | 0.17% |
| Severe Synthetic Sickness | 5 | 0.09% |
| Dosage Growth Defect | 4 | 0.07% |
| Tested Viable | 3 | 0.06% |
| Dosage Lethality | 2 | 0.04% |
| Synthetic Haploinsufficiency | 1 | 0.02% |
How interaction order is counted
- Triple: records with three indexed genes.
- Quadruple or higher: records with four or more indexed genes, supported by Gene_A through Gene_G in the core table.
- Pair-context / lower-order: a small set of records retained because they are directly relevant to higher-order interpretation.
Replace files, keep paths stable
When a new release is ready, replace the fixed-name JSON files in data/. The statistics above are then recalculated from each JSON file's _meta section when served through a local web server or GitHub Pages.
Opening the site directly with file:// shows the bundled snapshot because browsers commonly block local JSON fetching.