TripleDB is a manually curated, versioned resource for higher-order genetic relationships that are difficult to represent as isolated pairwise interactions.
The core object is a curated multi-gene relationship supported by primary literature and, where applicable, one or more BioGRID source interaction records.
Please cite the versioned TripleDB release when using downloaded data. For record-level citation, include the stable TDB accession, release version and access date. The database manuscript citation will be added after publication.
Peter X. Geng and Huaiqiu Zhu. TripleDB: a curated database of triple-gene and higher-order genetic interactions. Version 1.0.0. Zenodo. https://doi.org/10.5281/zenodo.20931612.
Version DOI: 10.5281/zenodo.20931612 · Website: https://tripledb.org
Please include relevant TDB accessions, BioGRID IDs and publication identifiers when reporting corrections or suggesting records.
First author / project contact:
peter_geng@stu.pku.edu.cn
Corresponding author:
Huaiqiu Zhu, hqzhu@pku.edu.cn
Suggested records should include organism, gene combination, relation type, PMID/DOI, source location and evidence text. Submission and correction history will be reviewed before inclusion in a public release.
TripleDB curated annotations and release files are distributed under the Creative Commons Attribution 4.0 International License. External source records, identifiers and publications should also be cited according to the original source database and publication requirements.
TripleDB search does not require registration or login. The static website reads public JSON files in the browser and does not require users to submit account information.
Stable releases are archived through GitHub and Zenodo. Updates are planned at least annually, with change summaries provided in the version history page.
TripleDB v1.0.0 is curated and maintained as a versioned database project.
Peter X. Geng, Peking University
First author and project maintainer · peter_geng@stu.pku.edu.cn
Huaiqiu Zhu, Peking University
Supervisor and corresponding author · hqzhu@pku.edu.cn
TripleDB acknowledges BioGRID and the original publications that provide source evidence for many records. Website deployment uses static files suitable for GitHub Pages, and the versioned release is archived through Zenodo.
