Search curated interactions
Query by gene symbol, alias, TDB accession, BioGRID interaction ID or publication, then filter by species, relation type and curation origin.
Curated evidence, explicit provenance
Higher-order genetic interactions, organized as citable records.
TripleDB is designed to integrate manually curated triple- and higher-order gene relationships with stable TDB accessions, source BioGRID records, publication evidence and transparent curation notes.
5,450Curated TDB records
5,091 triple records
10,202BioGRID source records
Source-evidence audit layer
0Manual non-BioGRID records
Source_ID contains TDB
8Organisms represented
15 experimental systems
706Supporting publications
Unique PubMed IDs detected
Showing the bundled statistics snapshot. Run the included local server to load replacement JSON files dynamically.
Core user journeys
Everything a database visitor should find quickly
The website separates curated biological conclusions from the source-evidence layer, while keeping both searchable and downloadable.
Verify source evidence
Use a BioGRID interaction ID to inspect the preserved source record and understand why multiple pairwise records were aggregated.
Download a frozen release
Provide the curated table, filtered source-evidence table, schema, checksums, license terms and release notes together.
Provenance pipeline
A transparent path from source records to TDB accessions
This hierarchy can become the central explanatory figure on the home page, documentation and manuscript.
STEP 01
Frozen BioGRID release
Record the exact source release, download date, format and citation.
STEP 02
Filtered evidence layer
Preserve all source columns for same-species, genetic, triple-related candidate records.
STEP 03
Manual aggregation
Combine relevant BioGRID IDs and literature evidence under explicit curation rules.
STEP 04
Stable TDB record
Publish a citable high-order interaction with provenance and revision history.
v1.0.0
Version history
Release status
TripleDB v1.0.0 is the current versioned static release. Fixed website filenames allow future data releases to replace previous deployment files without changing HTML or JavaScript paths.
Archived release DOI: 10.5281/zenodo.20931612.
The public website reads three JSON indexes from data/ and exposes three CSV downloads from downloads/. Statistics update automatically when the site is served through GitHub Pages.
Stable IDs and documented updates
- TDB accessions are never reassigned.
- New records append to the existing accession series.
- Revisions and deprecations remain visible in a change log.
- Source releases and added record counts are reported per version.
Update cadence: Stable releases are archived through GitHub and Zenodo; data updates are planned at least annually..