Downloads and deployment files

The website uses fixed public filenames so that a new release can replace the previous files without changing page code or links.

Current release: TripleDB v1.0.0

The public release is archived on Zenodo: 10.5281/zenodo.20931612. The website reads the fixed JSON files from data/ and exposes CSV downloads from downloads/.

Website indexes

JSON files used by the interface

These names are referenced centrally from assets/js/config.js.

Core JSON

TripleDB interaction index

Curated records, metadata, distributions and indexes for TDB ID, source ID, gene, organism and experimental system.

data/tdb_core_interaction_index.json·Current release file

Download JSON

Alias JSON

Gene alias search index

Organism-aware mappings from aliases, systematic names and official symbols to standardized gene records.

data/gene_alias_search_index_by_organism.json·Used for alias-aware gene search

Download JSON

Source JSON

BioGRID source index

Preserved source records indexed by BioGRID ID and publication source for provenance lookup.

data/biogrid_source_index.json·Current release file

Download JSON

Bulk tables

CSV files provided for reuse and inspection

The site links to these fixed names from the public downloads/ folder.

Core CSV

Curated higher-order interaction table

The human-readable source table from which the core interaction JSON is generated.

downloads/tdb_core_interaction_table.csv

Download CSV

Alias CSV

Gene alias table

The tabular source used to build the organism-aware alias index.

downloads/gene_alias_table.csv

Download CSV

Source CSV

BioGRID-derived source evidence table

The filtered source layer retained for traceability and manual inspection.

downloads/biogrid_source_table.csv

Download CSV

Fixed deployment tree

tripledb_site/
├── data/
│   ├── tdb_core_interaction_index.json
│   ├── gene_alias_search_index_by_organism.json
│   └── biogrid_source_index.json
└── downloads/
    ├── tdb_core_interaction_table.csv
    ├── gene_alias_table.csv
    └── biogrid_source_table.csv

Release workflow

Keep your master and intermediate files under your own descriptive naming system.
Generate a validated release copy of each JSON and CSV.
Copy or rename only the website-facing release copies to the six fixed names.
Replace the previous files, test locally, commit, archive the release through Zenodo, and deploy through GitHub Pages.

This separates internal provenance-rich filenames from stable public URLs. Current release DOI: 10.5281/zenodo.20931612.